other:Article Title: Simulation-guided tunable DNA probe design for mismatch tolerant hybridization
Article Snippet: 10 μL PCR reactions were set-up using 2 μL 5x HF Buffer (NEB), 0.5 μL 10 mM dNTPs (NEB), 0.5 μL 10 μM forward primer, 0.5 μL 10 μM reverse primer, 0.2 μL Phusion polymerase, and 4.5 μL water.
Article Title: Strong and complex host- and habitat-associated genetic differentiation in an apparently polyphagous leaf mining insect
Article Snippet: Phytophagous insects are astonishingly diverse, and their diversification is frequently shown to involve host shifting and host specialization.. Habitat-associated differentiation may also occur for insects exploiting a single host in multiple habitats, although this is much less frequently reported.. We tested for hostand habitat-associated differentiation in the holarctic and purportedly generalist leaf miner fly Nemorimyza posticata (Meigen) (Diptera: Agromyzidae), which is recorded from many host plants in the Asteraceae and from many different habitats.
Article Title: Hybrid Sequencing Reveals Novel Features in the Transcriptomic Organization of Equid Alphaherpesvirus 1
Article Snippet: Two RNA mixtures (1: Poly(A)+; 2: Poly(A)+ and Terminatorhandled RNA) were mixed with RT Adapter (oligo dT-containing T10 adapter), RNA CS (both from the ONT kit; the latter was applied for monitoring the sequencing quality), NEBNext Quick Ligation Reaction Buffer, and T4 DNA ligase (both from NEB), and they were incubated at room temperature for 10 min. RT reactions were performed using dNTPs (NEB), 5 × first-strand buffer, DTT (both from Invitrogen) and UltraPureTM DNase/RNase-Free water (Invitrogen), and then the sample was mixed with SuperScript III enzyme (Thermo Fisher Scientific).
Recombinant:Article Title: Identification of ALK in Thinness.
Article Snippet: .. REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Mouse monoclonal anti-b-actin Sigma A5316; RRID: AB_476743 Rabbit polyclonal anti-HSL Cell Signaling 4107; RRID: AB_2296900 Rabbit polyclonal anti-phospho-HSL (Ser660) Cell Signaling 4126; RRID: AB_490997 Rabbit polyclonal anti-Ucp1 Abcam ab10983; RRID: AB_2241462 Goat polyclonal anti-mouse IgG HRP Promega W4021; RRID: AB_430834 Rabbit IgG HRP linked F(ab’)2 GE Healthcare NA9340V; RRID: AB_772191 Biological Samples Human adipose tissue samples Nestlé Ling et al., 2019 Chemicals, Peptides, and Recombinant Proteins 3H-triolein PerkinElmer NET431001MC Tyloxapol Sigma Aldrich T8761 Ultima Gold Perkin Elmer 6013119 Petroleum ether 60-80 Supelco 1.01774 BSTFA Supelco 15222 TMCS Supelco 1.02333 Heptane Supelco 1.04390 Sep-Pak C18 Waters WAT054945 Phosphoblocker Blocking Rgnt Cell Biolabs AKR-103 ECL Plus Pierce 1896327 TRIzol Invitrogen 15596018 RIPA buffer Sigma R0278 Halt protease and phosphatase inhibitor cocktail Thermo Scientific 78440 DNase inactivation reagent Ambion #AM1906 dt18 NEB #S1316S dNTPs NEB #4475 RNase Inhibitor Thermo Fisher #EN0531 DTT Invitrogen #18080093 within SSIII kit Strand buffer Invitrogen #18080093 within SSIII kit Critical Commercial Assays Mouse Ultrasensitive Insulin ELISA Alpco 80-INSMSU-E10 Triglycerides, GPO-PAP Dialab D00390 HR Series NEFA-HR (2) Wako 991-34891 Corticosterone ELISA kit Enzo Life Sciences ADI-900-097 Mouse thyrotropin subunit beta ELISA EIAAB E0463m Mouse adiponectin/Acrp30 Immunoassay Quantikine MRP300 Oxytocin ELISA kit Enzo Life Sciences ADI-900-153A PeqGold TriFast VWR 30-2010 M-MLV Reverse Transcriptase Thermo Scientific 28025021 Universal Probes Mastermix BioRad 172-5284 RevertAid RT Kit Thermo Scientific K1691 DNase I, RNase-free Thermo Scientific EN0521 FastStart Universal SYBR Green Master Roche 04913914001 QIAshredder QIAGEN #79654 (Continued on next page) ll e1 Cell 181, 1–17.e1–e11, June 11, 2020 Please cite this article in press as: Orthofer et al., Identification of ALK in Thinness, Cell (2020), https://doi.org/10.1016/j.cell.2020.04.034 Article .. REAGENT or RESOURCE SOURCE IDENTIFIER RNeasy mini prep kit QIAGEN #74104 TurboDNase Invitrogen #AM2238 Superscript III Invitrogen #18080093 SybrGreen Thermo Fisher #4309155 Free Fatty Acid Assay Kit Abcam Ab65341 Triglycerides for Cobas Integra Roche Diagnostics #20767107322 Deposited Data GWAS thin-versus-control This manuscript http://www.geenivaramu.ee/tools/THIN_ NORMAL_FILTER_MAF_1prc_INFO_0.8.txt.gz GWAS control-versus-obese This manuscript http://www.geenivaramu.ee/tools/OBESE_ NORMAL_FILTER_MAF_1prc_INFO_0.8.txt.gz Human genotype data This manuscript https://genomics.ut.ee/en/biobank.ee/ data-access Single cell RNaseq Gene Expression Omnibus GSE132730 Experimental Models: Cell Lines ES cells: Alktm1a(EUCOMM)Wtsi EUCOMM EPD0632_2_E02 SH-SY5Y Sigma 94030304 Experimental Models: Organisms/Strains D. melanogaster: Act-Gal4/cyo Bloomington BDSC:4414 D. melanogaster: eIF2B-b RNAi VDRC VDRC:25426 D. melanogaster: CG11052 RNAi VDRC VDRC:23373 D. melanogaster: CG42675 RNAi VDRC VDRC:16171 D. melanogaster: CG33346 RNAi VDRC VDRC:47842 D. melanogaster: Syn1 RNAi VDRC VDRC:27893 D. melanogaster: Hth RNAi VDRC VDRC:12764 D. melanogaster: Spred RNAi VDRC VDRC:18024 D. melanogaster: Alk RNAi VDRC VDRC:107083 D. melanogaster: Paf-Aha RNAi VDRC VDRC:29003 D. melanogaster: AdamTS-A RNAi VDRC VDRC:33347 D. melanogaster: Nsun2 RNAi VDRC VDRC:37601 D. melanogaster: Trf4-2 RNAi VDRC VDRC:19799 D. melanogaster: Alk Overexpression Ruth Palmer Lab Lorén et al., 2001 Mouse: Alktm1Dgen (B6/J) Deltagen T1477 Mouse: Mdktm1Tmu RIKEN BRC animal RBRC02422 Mouse: Ptntm1Tmu RIKEN BRC animal RBRC02411 Mouse: Alkfl/fl This manuscript derived from Alktm1a(EUCOMM)Wtsi Mouse: Tg(Ucp1-icre)#Jcbr Jens Bruening Lab Turpin et al., 2014 Mouse: FVB/N-Tmem163Tg(ACTB-cre)2Mrt/J Jackson Laboratory Stock No 003376 Mouse: Villin cre Sylvie Robine Lab el Marjou et al., 2004 Mouse: B6.Cg-Commd10Tg(Vav1-icre)A2Kio/J Jackson Laboratory Stock No 008610 Mouse: B6;FVB-Tg(Adipoq-cre)1Evdr/J Jackson Laboratory Stock No 010803 Mouse: B6.Cg-Speer6-ps1Tg(Alb-cre)21Mgn/J Jackson Laboratory Stock No 003574 Mouse: B6.FVB(129S4)-Tg(Ckmm-cre)5Khn/J Jackson Laboratory Stock No 006475 Mouse: B6.Cg-Lepob/J Jackson Laboratory Stock No 000632 Mouse: C57BL/6J Jackson Laboratory Strain Code 632 Oligonucleotides See Table S6 This manuscript N/A (Continued on next page) ll Cell 181, 1–17.e1–e11, June 11, 2020 e2 Please cite this article in press as: Orthofer et al., Identification of ALK in Thinness, Cell (2020), https://doi.org/10.1016/j.cell.2020.04.034 Article
Blocking Assay:Article Title: Identification of ALK in Thinness.
Article Snippet: .. REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Mouse monoclonal anti-b-actin Sigma A5316; RRID: AB_476743 Rabbit polyclonal anti-HSL Cell Signaling 4107; RRID: AB_2296900 Rabbit polyclonal anti-phospho-HSL (Ser660) Cell Signaling 4126; RRID: AB_490997 Rabbit polyclonal anti-Ucp1 Abcam ab10983; RRID: AB_2241462 Goat polyclonal anti-mouse IgG HRP Promega W4021; RRID: AB_430834 Rabbit IgG HRP linked F(ab’)2 GE Healthcare NA9340V; RRID: AB_772191 Biological Samples Human adipose tissue samples Nestlé Ling et al., 2019 Chemicals, Peptides, and Recombinant Proteins 3H-triolein PerkinElmer NET431001MC Tyloxapol Sigma Aldrich T8761 Ultima Gold Perkin Elmer 6013119 Petroleum ether 60-80 Supelco 1.01774 BSTFA Supelco 15222 TMCS Supelco 1.02333 Heptane Supelco 1.04390 Sep-Pak C18 Waters WAT054945 Phosphoblocker Blocking Rgnt Cell Biolabs AKR-103 ECL Plus Pierce 1896327 TRIzol Invitrogen 15596018 RIPA buffer Sigma R0278 Halt protease and phosphatase inhibitor cocktail Thermo Scientific 78440 DNase inactivation reagent Ambion #AM1906 dt18 NEB #S1316S dNTPs NEB #4475 RNase Inhibitor Thermo Fisher #EN0531 DTT Invitrogen #18080093 within SSIII kit Strand buffer Invitrogen #18080093 within SSIII kit Critical Commercial Assays Mouse Ultrasensitive Insulin ELISA Alpco 80-INSMSU-E10 Triglycerides, GPO-PAP Dialab D00390 HR Series NEFA-HR (2) Wako 991-34891 Corticosterone ELISA kit Enzo Life Sciences ADI-900-097 Mouse thyrotropin subunit beta ELISA EIAAB E0463m Mouse adiponectin/Acrp30 Immunoassay Quantikine MRP300 Oxytocin ELISA kit Enzo Life Sciences ADI-900-153A PeqGold TriFast VWR 30-2010 M-MLV Reverse Transcriptase Thermo Scientific 28025021 Universal Probes Mastermix BioRad 172-5284 RevertAid RT Kit Thermo Scientific K1691 DNase I, RNase-free Thermo Scientific EN0521 FastStart Universal SYBR Green Master Roche 04913914001 QIAshredder QIAGEN #79654 (Continued on next page) ll e1 Cell 181, 1–17.e1–e11, June 11, 2020 Please cite this article in press as: Orthofer et al., Identification of ALK in Thinness, Cell (2020), https://doi.org/10.1016/j.cell.2020.04.034 Article .. REAGENT or RESOURCE SOURCE IDENTIFIER RNeasy mini prep kit QIAGEN #74104 TurboDNase Invitrogen #AM2238 Superscript III Invitrogen #18080093 SybrGreen Thermo Fisher #4309155 Free Fatty Acid Assay Kit Abcam Ab65341 Triglycerides for Cobas Integra Roche Diagnostics #20767107322 Deposited Data GWAS thin-versus-control This manuscript http://www.geenivaramu.ee/tools/THIN_ NORMAL_FILTER_MAF_1prc_INFO_0.8.txt.gz GWAS control-versus-obese This manuscript http://www.geenivaramu.ee/tools/OBESE_ NORMAL_FILTER_MAF_1prc_INFO_0.8.txt.gz Human genotype data This manuscript https://genomics.ut.ee/en/biobank.ee/ data-access Single cell RNaseq Gene Expression Omnibus GSE132730 Experimental Models: Cell Lines ES cells: Alktm1a(EUCOMM)Wtsi EUCOMM EPD0632_2_E02 SH-SY5Y Sigma 94030304 Experimental Models: Organisms/Strains D. melanogaster: Act-Gal4/cyo Bloomington BDSC:4414 D. melanogaster: eIF2B-b RNAi VDRC VDRC:25426 D. melanogaster: CG11052 RNAi VDRC VDRC:23373 D. melanogaster: CG42675 RNAi VDRC VDRC:16171 D. melanogaster: CG33346 RNAi VDRC VDRC:47842 D. melanogaster: Syn1 RNAi VDRC VDRC:27893 D. melanogaster: Hth RNAi VDRC VDRC:12764 D. melanogaster: Spred RNAi VDRC VDRC:18024 D. melanogaster: Alk RNAi VDRC VDRC:107083 D. melanogaster: Paf-Aha RNAi VDRC VDRC:29003 D. melanogaster: AdamTS-A RNAi VDRC VDRC:33347 D. melanogaster: Nsun2 RNAi VDRC VDRC:37601 D. melanogaster: Trf4-2 RNAi VDRC VDRC:19799 D. melanogaster: Alk Overexpression Ruth Palmer Lab Lorén et al., 2001 Mouse: Alktm1Dgen (B6/J) Deltagen T1477 Mouse: Mdktm1Tmu RIKEN BRC animal RBRC02422 Mouse: Ptntm1Tmu RIKEN BRC animal RBRC02411 Mouse: Alkfl/fl This manuscript derived from Alktm1a(EUCOMM)Wtsi Mouse: Tg(Ucp1-icre)#Jcbr Jens Bruening Lab Turpin et al., 2014 Mouse: FVB/N-Tmem163Tg(ACTB-cre)2Mrt/J Jackson Laboratory Stock No 003376 Mouse: Villin cre Sylvie Robine Lab el Marjou et al., 2004 Mouse: B6.Cg-Commd10Tg(Vav1-icre)A2Kio/J Jackson Laboratory Stock No 008610 Mouse: B6;FVB-Tg(Adipoq-cre)1Evdr/J Jackson Laboratory Stock No 010803 Mouse: B6.Cg-Speer6-ps1Tg(Alb-cre)21Mgn/J Jackson Laboratory Stock No 003574 Mouse: B6.FVB(129S4)-Tg(Ckmm-cre)5Khn/J Jackson Laboratory Stock No 006475 Mouse: B6.Cg-Lepob/J Jackson Laboratory Stock No 000632 Mouse: C57BL/6J Jackson Laboratory Strain Code 632 Oligonucleotides See Table S6 This manuscript N/A (Continued on next page) ll Cell 181, 1–17.e1–e11, June 11, 2020 e2 Please cite this article in press as: Orthofer et al., Identification of ALK in Thinness, Cell (2020), https://doi.org/10.1016/j.cell.2020.04.034 Article
Enzyme-linked Immunosorbent Assay:Article Title: Identification of ALK in Thinness.
Article Snippet: .. REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Mouse monoclonal anti-b-actin Sigma A5316; RRID: AB_476743 Rabbit polyclonal anti-HSL Cell Signaling 4107; RRID: AB_2296900 Rabbit polyclonal anti-phospho-HSL (Ser660) Cell Signaling 4126; RRID: AB_490997 Rabbit polyclonal anti-Ucp1 Abcam ab10983; RRID: AB_2241462 Goat polyclonal anti-mouse IgG HRP Promega W4021; RRID: AB_430834 Rabbit IgG HRP linked F(ab’)2 GE Healthcare NA9340V; RRID: AB_772191 Biological Samples Human adipose tissue samples Nestlé Ling et al., 2019 Chemicals, Peptides, and Recombinant Proteins 3H-triolein PerkinElmer NET431001MC Tyloxapol Sigma Aldrich T8761 Ultima Gold Perkin Elmer 6013119 Petroleum ether 60-80 Supelco 1.01774 BSTFA Supelco 15222 TMCS Supelco 1.02333 Heptane Supelco 1.04390 Sep-Pak C18 Waters WAT054945 Phosphoblocker Blocking Rgnt Cell Biolabs AKR-103 ECL Plus Pierce 1896327 TRIzol Invitrogen 15596018 RIPA buffer Sigma R0278 Halt protease and phosphatase inhibitor cocktail Thermo Scientific 78440 DNase inactivation reagent Ambion #AM1906 dt18 NEB #S1316S dNTPs NEB #4475 RNase Inhibitor Thermo Fisher #EN0531 DTT Invitrogen #18080093 within SSIII kit Strand buffer Invitrogen #18080093 within SSIII kit Critical Commercial Assays Mouse Ultrasensitive Insulin ELISA Alpco 80-INSMSU-E10 Triglycerides, GPO-PAP Dialab D00390 HR Series NEFA-HR (2) Wako 991-34891 Corticosterone ELISA kit Enzo Life Sciences ADI-900-097 Mouse thyrotropin subunit beta ELISA EIAAB E0463m Mouse adiponectin/Acrp30 Immunoassay Quantikine MRP300 Oxytocin ELISA kit Enzo Life Sciences ADI-900-153A PeqGold TriFast VWR 30-2010 M-MLV Reverse Transcriptase Thermo Scientific 28025021 Universal Probes Mastermix BioRad 172-5284 RevertAid RT Kit Thermo Scientific K1691 DNase I, RNase-free Thermo Scientific EN0521 FastStart Universal SYBR Green Master Roche 04913914001 QIAshredder QIAGEN #79654 (Continued on next page) ll e1 Cell 181, 1–17.e1–e11, June 11, 2020 Please cite this article in press as: Orthofer et al., Identification of ALK in Thinness, Cell (2020), https://doi.org/10.1016/j.cell.2020.04.034 Article .. REAGENT or RESOURCE SOURCE IDENTIFIER RNeasy mini prep kit QIAGEN #74104 TurboDNase Invitrogen #AM2238 Superscript III Invitrogen #18080093 SybrGreen Thermo Fisher #4309155 Free Fatty Acid Assay Kit Abcam Ab65341 Triglycerides for Cobas Integra Roche Diagnostics #20767107322 Deposited Data GWAS thin-versus-control This manuscript http://www.geenivaramu.ee/tools/THIN_ NORMAL_FILTER_MAF_1prc_INFO_0.8.txt.gz GWAS control-versus-obese This manuscript http://www.geenivaramu.ee/tools/OBESE_ NORMAL_FILTER_MAF_1prc_INFO_0.8.txt.gz Human genotype data This manuscript https://genomics.ut.ee/en/biobank.ee/ data-access Single cell RNaseq Gene Expression Omnibus GSE132730 Experimental Models: Cell Lines ES cells: Alktm1a(EUCOMM)Wtsi EUCOMM EPD0632_2_E02 SH-SY5Y Sigma 94030304 Experimental Models: Organisms/Strains D. melanogaster: Act-Gal4/cyo Bloomington BDSC:4414 D. melanogaster: eIF2B-b RNAi VDRC VDRC:25426 D. melanogaster: CG11052 RNAi VDRC VDRC:23373 D. melanogaster: CG42675 RNAi VDRC VDRC:16171 D. melanogaster: CG33346 RNAi VDRC VDRC:47842 D. melanogaster: Syn1 RNAi VDRC VDRC:27893 D. melanogaster: Hth RNAi VDRC VDRC:12764 D. melanogaster: Spred RNAi VDRC VDRC:18024 D. melanogaster: Alk RNAi VDRC VDRC:107083 D. melanogaster: Paf-Aha RNAi VDRC VDRC:29003 D. melanogaster: AdamTS-A RNAi VDRC VDRC:33347 D. melanogaster: Nsun2 RNAi VDRC VDRC:37601 D. melanogaster: Trf4-2 RNAi VDRC VDRC:19799 D. melanogaster: Alk Overexpression Ruth Palmer Lab Lorén et al., 2001 Mouse: Alktm1Dgen (B6/J) Deltagen T1477 Mouse: Mdktm1Tmu RIKEN BRC animal RBRC02422 Mouse: Ptntm1Tmu RIKEN BRC animal RBRC02411 Mouse: Alkfl/fl This manuscript derived from Alktm1a(EUCOMM)Wtsi Mouse: Tg(Ucp1-icre)#Jcbr Jens Bruening Lab Turpin et al., 2014 Mouse: FVB/N-Tmem163Tg(ACTB-cre)2Mrt/J Jackson Laboratory Stock No 003376 Mouse: Villin cre Sylvie Robine Lab el Marjou et al., 2004 Mouse: B6.Cg-Commd10Tg(Vav1-icre)A2Kio/J Jackson Laboratory Stock No 008610 Mouse: B6;FVB-Tg(Adipoq-cre)1Evdr/J Jackson Laboratory Stock No 010803 Mouse: B6.Cg-Speer6-ps1Tg(Alb-cre)21Mgn/J Jackson Laboratory Stock No 003574 Mouse: B6.FVB(129S4)-Tg(Ckmm-cre)5Khn/J Jackson Laboratory Stock No 006475 Mouse: B6.Cg-Lepob/J Jackson Laboratory Stock No 000632 Mouse: C57BL/6J Jackson Laboratory Strain Code 632 Oligonucleotides See Table S6 This manuscript N/A (Continued on next page) ll Cell 181, 1–17.e1–e11, June 11, 2020 e2 Please cite this article in press as: Orthofer et al., Identification of ALK in Thinness, Cell (2020), https://doi.org/10.1016/j.cell.2020.04.034 Article
Reverse Transcription:Article Title: Identification of ALK in Thinness.
Article Snippet: .. REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Mouse monoclonal anti-b-actin Sigma A5316; RRID: AB_476743 Rabbit polyclonal anti-HSL Cell Signaling 4107; RRID: AB_2296900 Rabbit polyclonal anti-phospho-HSL (Ser660) Cell Signaling 4126; RRID: AB_490997 Rabbit polyclonal anti-Ucp1 Abcam ab10983; RRID: AB_2241462 Goat polyclonal anti-mouse IgG HRP Promega W4021; RRID: AB_430834 Rabbit IgG HRP linked F(ab’)2 GE Healthcare NA9340V; RRID: AB_772191 Biological Samples Human adipose tissue samples Nestlé Ling et al., 2019 Chemicals, Peptides, and Recombinant Proteins 3H-triolein PerkinElmer NET431001MC Tyloxapol Sigma Aldrich T8761 Ultima Gold Perkin Elmer 6013119 Petroleum ether 60-80 Supelco 1.01774 BSTFA Supelco 15222 TMCS Supelco 1.02333 Heptane Supelco 1.04390 Sep-Pak C18 Waters WAT054945 Phosphoblocker Blocking Rgnt Cell Biolabs AKR-103 ECL Plus Pierce 1896327 TRIzol Invitrogen 15596018 RIPA buffer Sigma R0278 Halt protease and phosphatase inhibitor cocktail Thermo Scientific 78440 DNase inactivation reagent Ambion #AM1906 dt18 NEB #S1316S dNTPs NEB #4475 RNase Inhibitor Thermo Fisher #EN0531 DTT Invitrogen #18080093 within SSIII kit Strand buffer Invitrogen #18080093 within SSIII kit Critical Commercial Assays Mouse Ultrasensitive Insulin ELISA Alpco 80-INSMSU-E10 Triglycerides, GPO-PAP Dialab D00390 HR Series NEFA-HR (2) Wako 991-34891 Corticosterone ELISA kit Enzo Life Sciences ADI-900-097 Mouse thyrotropin subunit beta ELISA EIAAB E0463m Mouse adiponectin/Acrp30 Immunoassay Quantikine MRP300 Oxytocin ELISA kit Enzo Life Sciences ADI-900-153A PeqGold TriFast VWR 30-2010 M-MLV Reverse Transcriptase Thermo Scientific 28025021 Universal Probes Mastermix BioRad 172-5284 RevertAid RT Kit Thermo Scientific K1691 DNase I, RNase-free Thermo Scientific EN0521 FastStart Universal SYBR Green Master Roche 04913914001 QIAshredder QIAGEN #79654 (Continued on next page) ll e1 Cell 181, 1–17.e1–e11, June 11, 2020 Please cite this article in press as: Orthofer et al., Identification of ALK in Thinness, Cell (2020), https://doi.org/10.1016/j.cell.2020.04.034 Article .. REAGENT or RESOURCE SOURCE IDENTIFIER RNeasy mini prep kit QIAGEN #74104 TurboDNase Invitrogen #AM2238 Superscript III Invitrogen #18080093 SybrGreen Thermo Fisher #4309155 Free Fatty Acid Assay Kit Abcam Ab65341 Triglycerides for Cobas Integra Roche Diagnostics #20767107322 Deposited Data GWAS thin-versus-control This manuscript http://www.geenivaramu.ee/tools/THIN_ NORMAL_FILTER_MAF_1prc_INFO_0.8.txt.gz GWAS control-versus-obese This manuscript http://www.geenivaramu.ee/tools/OBESE_ NORMAL_FILTER_MAF_1prc_INFO_0.8.txt.gz Human genotype data This manuscript https://genomics.ut.ee/en/biobank.ee/ data-access Single cell RNaseq Gene Expression Omnibus GSE132730 Experimental Models: Cell Lines ES cells: Alktm1a(EUCOMM)Wtsi EUCOMM EPD0632_2_E02 SH-SY5Y Sigma 94030304 Experimental Models: Organisms/Strains D. melanogaster: Act-Gal4/cyo Bloomington BDSC:4414 D. melanogaster: eIF2B-b RNAi VDRC VDRC:25426 D. melanogaster: CG11052 RNAi VDRC VDRC:23373 D. melanogaster: CG42675 RNAi VDRC VDRC:16171 D. melanogaster: CG33346 RNAi VDRC VDRC:47842 D. melanogaster: Syn1 RNAi VDRC VDRC:27893 D. melanogaster: Hth RNAi VDRC VDRC:12764 D. melanogaster: Spred RNAi VDRC VDRC:18024 D. melanogaster: Alk RNAi VDRC VDRC:107083 D. melanogaster: Paf-Aha RNAi VDRC VDRC:29003 D. melanogaster: AdamTS-A RNAi VDRC VDRC:33347 D. melanogaster: Nsun2 RNAi VDRC VDRC:37601 D. melanogaster: Trf4-2 RNAi VDRC VDRC:19799 D. melanogaster: Alk Overexpression Ruth Palmer Lab Lorén et al., 2001 Mouse: Alktm1Dgen (B6/J) Deltagen T1477 Mouse: Mdktm1Tmu RIKEN BRC animal RBRC02422 Mouse: Ptntm1Tmu RIKEN BRC animal RBRC02411 Mouse: Alkfl/fl This manuscript derived from Alktm1a(EUCOMM)Wtsi Mouse: Tg(Ucp1-icre)#Jcbr Jens Bruening Lab Turpin et al., 2014 Mouse: FVB/N-Tmem163Tg(ACTB-cre)2Mrt/J Jackson Laboratory Stock No 003376 Mouse: Villin cre Sylvie Robine Lab el Marjou et al., 2004 Mouse: B6.Cg-Commd10Tg(Vav1-icre)A2Kio/J Jackson Laboratory Stock No 008610 Mouse: B6;FVB-Tg(Adipoq-cre)1Evdr/J Jackson Laboratory Stock No 010803 Mouse: B6.Cg-Speer6-ps1Tg(Alb-cre)21Mgn/J Jackson Laboratory Stock No 003574 Mouse: B6.FVB(129S4)-Tg(Ckmm-cre)5Khn/J Jackson Laboratory Stock No 006475 Mouse: B6.Cg-Lepob/J Jackson Laboratory Stock No 000632 Mouse: C57BL/6J Jackson Laboratory Strain Code 632 Oligonucleotides See Table S6 This manuscript N/A (Continued on next page) ll Cell 181, 1–17.e1–e11, June 11, 2020 e2 Please cite this article in press as: Orthofer et al., Identification of ALK in Thinness, Cell (2020), https://doi.org/10.1016/j.cell.2020.04.034 Article
SYBR Green Assay:Article Title: Identification of ALK in Thinness.
Article Snippet: .. REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Mouse monoclonal anti-b-actin Sigma A5316; RRID: AB_476743 Rabbit polyclonal anti-HSL Cell Signaling 4107; RRID: AB_2296900 Rabbit polyclonal anti-phospho-HSL (Ser660) Cell Signaling 4126; RRID: AB_490997 Rabbit polyclonal anti-Ucp1 Abcam ab10983; RRID: AB_2241462 Goat polyclonal anti-mouse IgG HRP Promega W4021; RRID: AB_430834 Rabbit IgG HRP linked F(ab’)2 GE Healthcare NA9340V; RRID: AB_772191 Biological Samples Human adipose tissue samples Nestlé Ling et al., 2019 Chemicals, Peptides, and Recombinant Proteins 3H-triolein PerkinElmer NET431001MC Tyloxapol Sigma Aldrich T8761 Ultima Gold Perkin Elmer 6013119 Petroleum ether 60-80 Supelco 1.01774 BSTFA Supelco 15222 TMCS Supelco 1.02333 Heptane Supelco 1.04390 Sep-Pak C18 Waters WAT054945 Phosphoblocker Blocking Rgnt Cell Biolabs AKR-103 ECL Plus Pierce 1896327 TRIzol Invitrogen 15596018 RIPA buffer Sigma R0278 Halt protease and phosphatase inhibitor cocktail Thermo Scientific 78440 DNase inactivation reagent Ambion #AM1906 dt18 NEB #S1316S dNTPs NEB #4475 RNase Inhibitor Thermo Fisher #EN0531 DTT Invitrogen #18080093 within SSIII kit Strand buffer Invitrogen #18080093 within SSIII kit Critical Commercial Assays Mouse Ultrasensitive Insulin ELISA Alpco 80-INSMSU-E10 Triglycerides, GPO-PAP Dialab D00390 HR Series NEFA-HR (2) Wako 991-34891 Corticosterone ELISA kit Enzo Life Sciences ADI-900-097 Mouse thyrotropin subunit beta ELISA EIAAB E0463m Mouse adiponectin/Acrp30 Immunoassay Quantikine MRP300 Oxytocin ELISA kit Enzo Life Sciences ADI-900-153A PeqGold TriFast VWR 30-2010 M-MLV Reverse Transcriptase Thermo Scientific 28025021 Universal Probes Mastermix BioRad 172-5284 RevertAid RT Kit Thermo Scientific K1691 DNase I, RNase-free Thermo Scientific EN0521 FastStart Universal SYBR Green Master Roche 04913914001 QIAshredder QIAGEN #79654 (Continued on next page) ll e1 Cell 181, 1–17.e1–e11, June 11, 2020 Please cite this article in press as: Orthofer et al., Identification of ALK in Thinness, Cell (2020), https://doi.org/10.1016/j.cell.2020.04.034 Article .. REAGENT or RESOURCE SOURCE IDENTIFIER RNeasy mini prep kit QIAGEN #74104 TurboDNase Invitrogen #AM2238 Superscript III Invitrogen #18080093 SybrGreen Thermo Fisher #4309155 Free Fatty Acid Assay Kit Abcam Ab65341 Triglycerides for Cobas Integra Roche Diagnostics #20767107322 Deposited Data GWAS thin-versus-control This manuscript http://www.geenivaramu.ee/tools/THIN_ NORMAL_FILTER_MAF_1prc_INFO_0.8.txt.gz GWAS control-versus-obese This manuscript http://www.geenivaramu.ee/tools/OBESE_ NORMAL_FILTER_MAF_1prc_INFO_0.8.txt.gz Human genotype data This manuscript https://genomics.ut.ee/en/biobank.ee/ data-access Single cell RNaseq Gene Expression Omnibus GSE132730 Experimental Models: Cell Lines ES cells: Alktm1a(EUCOMM)Wtsi EUCOMM EPD0632_2_E02 SH-SY5Y Sigma 94030304 Experimental Models: Organisms/Strains D. melanogaster: Act-Gal4/cyo Bloomington BDSC:4414 D. melanogaster: eIF2B-b RNAi VDRC VDRC:25426 D. melanogaster: CG11052 RNAi VDRC VDRC:23373 D. melanogaster: CG42675 RNAi VDRC VDRC:16171 D. melanogaster: CG33346 RNAi VDRC VDRC:47842 D. melanogaster: Syn1 RNAi VDRC VDRC:27893 D. melanogaster: Hth RNAi VDRC VDRC:12764 D. melanogaster: Spred RNAi VDRC VDRC:18024 D. melanogaster: Alk RNAi VDRC VDRC:107083 D. melanogaster: Paf-Aha RNAi VDRC VDRC:29003 D. melanogaster: AdamTS-A RNAi VDRC VDRC:33347 D. melanogaster: Nsun2 RNAi VDRC VDRC:37601 D. melanogaster: Trf4-2 RNAi VDRC VDRC:19799 D. melanogaster: Alk Overexpression Ruth Palmer Lab Lorén et al., 2001 Mouse: Alktm1Dgen (B6/J) Deltagen T1477 Mouse: Mdktm1Tmu RIKEN BRC animal RBRC02422 Mouse: Ptntm1Tmu RIKEN BRC animal RBRC02411 Mouse: Alkfl/fl This manuscript derived from Alktm1a(EUCOMM)Wtsi Mouse: Tg(Ucp1-icre)#Jcbr Jens Bruening Lab Turpin et al., 2014 Mouse: FVB/N-Tmem163Tg(ACTB-cre)2Mrt/J Jackson Laboratory Stock No 003376 Mouse: Villin cre Sylvie Robine Lab el Marjou et al., 2004 Mouse: B6.Cg-Commd10Tg(Vav1-icre)A2Kio/J Jackson Laboratory Stock No 008610 Mouse: B6;FVB-Tg(Adipoq-cre)1Evdr/J Jackson Laboratory Stock No 010803 Mouse: B6.Cg-Speer6-ps1Tg(Alb-cre)21Mgn/J Jackson Laboratory Stock No 003574 Mouse: B6.FVB(129S4)-Tg(Ckmm-cre)5Khn/J Jackson Laboratory Stock No 006475 Mouse: B6.Cg-Lepob/J Jackson Laboratory Stock No 000632 Mouse: C57BL/6J Jackson Laboratory Strain Code 632 Oligonucleotides See Table S6 This manuscript N/A (Continued on next page) ll Cell 181, 1–17.e1–e11, June 11, 2020 e2 Please cite this article in press as: Orthofer et al., Identification of ALK in Thinness, Cell (2020), https://doi.org/10.1016/j.cell.2020.04.034 Article
Article Title: The poxvirus F17 protein counteracts mitochondrially orchestrated antiviral responses
Article Snippet: DNA concentrations were determined using a ThermoFisher Scientific NanoDrop 8000. .. PCR conditions were as follows; a standardized volume of DNA across all samples, 1x Q5 PCR Buffer NEB (Cat # B9027), 2U Q5 High-Fidelity DNA Polymerase NEB (Cat # M0491), 0.3 mM dNTPs NEB (Cat # N0447), Forward Primer (0.3 μM), Reverse Primer (0.3 μM), made up to 50 μl using RNase Free H 2 O. PowerUp SYBR Green Master Mix (ThermoFisher Scientific, Cat# A25741) was used as per the manufacturer’s guidelines. ..
Polymerase Chain Reaction:Article Title: The poxvirus F17 protein counteracts mitochondrially orchestrated antiviral responses
Article Snippet: DNA concentrations were determined using a ThermoFisher Scientific NanoDrop 8000. .. PCR conditions were as follows; a standardized volume of DNA across all samples, 1x Q5 PCR Buffer NEB (Cat # B9027), 2U Q5 High-Fidelity DNA Polymerase NEB (Cat # M0491), 0.3 mM dNTPs NEB (Cat # N0447), Forward Primer (0.3 μM), Reverse Primer (0.3 μM), made up to 50 μl using RNase Free H 2 O. PowerUp SYBR Green Master Mix (ThermoFisher Scientific, Cat# A25741) was used as per the manufacturer’s guidelines. ..
Article Title: The poxvirus F17 protein counteracts mitochondrially orchestrated antiviral responses.
Article Snippet: DNA concentrations were determined using a ThermoFisher Scientific NanoDrop 8000. .. PCR conditions were as follows; a standardized volume of DNA across all samples, 1x Q5 PCR Buffer NEB (Cat # B9027), 2UQ5 High-Fidelity DNA Polymerase NEB (Cat # M0491), 0.3mM dNTPs NEB (Cat # N0447), Forward Primer (0.3μM), Reverse Primer (0.3μM), made up to 50μl using RNase Free H2O. .. PowerUp SYBR Green Master Mix (ThermoFisher Scientific, Cat# A25741) was used as per the manufacturer’s guidelines.
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